CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.1751 rna-evm.model.Chr1.1751 Chr1 55721581 55726721 PREDICTED: 60S ribosomal protein L9 GO:0003735;GO:0005840;GO:0006412;GO:0019843 K02940
gene-evm.TU.Chr1.1752 rna-evm.model.Chr1.1752 Chr1 55758499 55771543 uncharacterized protein nan nan
gene-evm.TU.Chr1.1753 rna-evm.model.Chr1.1753 Chr1 55774639 55774932 PREDICTED: complement component 4 nan nan
gene-evm.TU.Chr1.1754 rna-evm.model.Chr1.1754 Chr1 55774987 55782822 uncharacterized protein nan nan
gene-evm.TU.Chr1.1755 rna-evm.model.Chr1.1755 Chr1 55793285 55793899 uncharacterized protein nan nan
gene-evm.TU.Chr1.1756 rna-evm.model.Chr1.1756 Chr1 55793966 55803349 PREDICTED: Collagen alpha-2(IV) chain nan K08131
gene-evm.TU.Chr1.1757 rna-evm.model.Chr1.1757 Chr1 55833860 55840898 PREDICTED: Collagen alpha-1(XXI) chain nan K16629
gene-evm.TU.Chr1.1758 rna-evm.model.Chr1.1758 Chr1 56002886 56003086 uncharacterized protein nan K07483
gene-evm.TU.Chr1.1759 rna-evm.model.Chr1.1759 Chr1 56003130 56004173 PREDICTED: Tigger transposable element-derived protein 1 GO:0003676 K07494
gene-evm.TU.Chr1.176 rna-evm.model.Chr1.176 Chr1 5600285 5630562 PREDICTED: Calcium uptake protein 3, mitochondrial GO:0005509;GO:0006851 K23843

For more detailed data, you can explore the Download section to access the full dataset.