CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.946 rna-evm.model.Chr12.946 Chr12 31250564 31257168 PREDICTED: Organic cation transporter protein GO:0016020;GO:0022857;GO:0055085 K08202
gene-evm.TU.Chr12.947 rna-evm.model.Chr12.947 Chr12 31262705 31263900 PREDICTED: sigma-class glutathione S-transferase nan K04097
gene-evm.TU.Chr12.949 rna-evm.model.Chr12.949 Chr12 31393607 31394434 PREDICTED: Ankyrin repeat and SOCS box protein 13 GO:0005515 K10335
gene-evm.TU.Chr12.95 rna-evm.model.Chr12.95 Chr12 3512640 3523896 PREDICTED: Ras-responsive element-binding protein 1 GO:0003676 K20210
gene-evm.TU.Chr12.950 rna-evm.model.Chr12.950 Chr12 31394662 31395428 PREDICTED: MIEF1 upstream open reading frame protein nan K22069
gene-evm.TU.Chr12.951 rna-evm.model.Chr12.951 Chr12 31397929 31408570 PREDICTED: Lysosomal acid phosphatase nan K14410
gene-evm.TU.Chr12.952 rna-evm.model.Chr12.952 Chr12 31412481 31418733 PREDICTED: DNA excision repair protein ERCC-6-like [EC:3.6.4.12] nan K23934
gene-evm.TU.Chr12.953 rna-evm.model.Chr12.953 Chr12 31422103 31423547 PREDICTED: Transcription elongation factor spt5 nan K13834
gene-evm.TU.Chr12.954 rna-evm.model.Chr12.954 Chr12 31428567 31447239 PREDICTED: Serine protease inhibitor Cvsi-2 nan K08785
gene-evm.TU.Chr12.955 rna-evm.model.Chr12.955 Chr12 31456555 31457358 PREDICTED: Brevican core protein nan K06560

For more detailed data, you can explore the Download section to access the full dataset.