CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.92 rna-evm.model.Chr12.92 Chr12 3434737 3459275 PREDICTED: Gamma-tubulin complex component 5 GO:0000226;GO:0000922;GO:0005815;GO:0007020;GO:0043015 K16572
gene-evm.TU.Chr12.920 rna-evm.model.Chr12.920 Chr12 30310653 30322902 PREDICTED: Glutathione hydrolase 1 proenzyme GO:0006751;GO:0036374 K18592
gene-evm.TU.Chr12.921 rna-evm.model.Chr12.921 Chr12 30332790 30348251 PREDICTED: Glutathione hydrolase 1 proenzyme GO:0006751;GO:0036374 K18592
gene-evm.TU.Chr12.923 rna-evm.model.Chr12.923 Chr12 30419958 30422252 PREDICTED: Guanylate-binding protein 6 GO:0003924;GO:0005525 K20899
gene-evm.TU.Chr12.924 rna-evm.model.Chr12.924 Chr12 30422527 30438081 PREDICTED: Guanylate-binding protein 1 GO:0003924;GO:0005525 K20899
gene-evm.TU.Chr12.925 rna-evm.model.Chr12.925 Chr12 30495300 30515484 uncharacterized protein nan nan
gene-evm.TU.Chr12.926 rna-evm.model.Chr12.926 Chr12 30548070 30577830 PREDICTED: Ecdysone receptor GO:0003677;GO:0003700;GO:0003707;GO:0004879;GO:0005634;GO:0006355;GO:0008270;GO:0035076;GO:0035100;GO:0043565 K14034
gene-evm.TU.Chr12.930 rna-evm.model.Chr12.930 Chr12 30619467 30622619 PREDICTED: Partner of bursicon GO:0001664;GO:0005184;GO:0031395 K25483
gene-evm.TU.Chr12.931 rna-evm.model.Chr12.931 Chr12 30625465 30630276 PREDICTED: matrilin-3 nan K05449
gene-evm.TU.Chr12.932 rna-evm.model.Chr12.932 Chr12 30651216 30664557 PREDICTED: Rho-related GTP-binding protein RhoE GO:0003924;GO:0005525;GO:0007264 K07859

For more detailed data, you can explore the Download section to access the full dataset.