CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.933 rna-evm.model.Chr12.933 Chr12 30670568 30692253 PREDICTED: CCR4-NOT transcription complex subunit 9 GO:0006402;GO:0030014 K12606
gene-evm.TU.Chr12.936 rna-evm.model.Chr12.936 Chr12 30745635 30748165 PREDICTED: inner nuclear membrane protein Man1 nan K21233
gene-evm.TU.Chr12.937 rna-evm.model.Chr12.937 Chr12 30781400 30782395 PREDICTED: Protein ALP1-like nan K23222
gene-evm.TU.Chr12.938 rna-evm.model.Chr12.938 Chr12 30782463 30783310 PREDICTED: alpha-2-macroglobulin GO:0003676 K23204
gene-evm.TU.Chr12.939 rna-evm.model.Chr12.939 Chr12 30794044 30795333 uncharacterized protein nan K13681
gene-evm.TU.Chr12.94 rna-evm.model.Chr12.94 Chr12 3488469 3491801 PREDICTED: Failed axon connections homolog nan K21106
gene-evm.TU.Chr12.940 rna-evm.model.Chr12.940 Chr12 30805723 30816598 PREDICTED: M-phase inducer phosphatase 1 GO:0004725;GO:0006470;GO:1902751 K05866
gene-evm.TU.Chr12.942 rna-evm.model.Chr12.942 Chr12 30878890 30881049 PREDICTED: Acetylcholinesterase nan K03927
gene-evm.TU.Chr12.944 rna-evm.model.Chr12.944 Chr12 31192344 31215418 PREDICTED: Spermatogenesis-associated protein 48 nan K25539
gene-evm.TU.Chr12.945 rna-evm.model.Chr12.945 Chr12 31215635 31243755 PREDICTED: Probable C-mannosyltransferase DPY19L1 GO:0016020 K24553

For more detailed data, you can explore the Download section to access the full dataset.