CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.903 rna-evm.model.Chr12.903 Chr12 29888426 29889346 uncharacterized protein nan K06896
gene-evm.TU.Chr12.904 rna-evm.model.Chr12.904 Chr12 29889583 29892749 uncharacterized protein nan nan
gene-evm.TU.Chr12.905 rna-evm.model.Chr12.905 Chr12 29899053 29911194 PREDICTED: Aquaporin-10 GO:0015267;GO:0016020;GO:0055085 K09878
gene-evm.TU.Chr12.907 rna-evm.model.Chr12.907 Chr12 29996290 30001689 uncharacterized protein GO:0016020 K19289
gene-evm.TU.Chr12.909 rna-evm.model.Chr12.909 Chr12 30041865 30060464 PREDICTED: Guanylate-binding protein 1 GO:0003924;GO:0005525 K20899
gene-evm.TU.Chr12.91 rna-evm.model.Chr12.91 Chr12 3426973 3430154 PREDICTED: E3 ubiquitin-protein ligase TRIM33 GO:0008270 K12026
gene-evm.TU.Chr12.916 rna-evm.model.Chr12.916 Chr12 30183915 30186635 uncharacterized protein GO:0004930;GO:0007186;GO:0016020 K04202
gene-evm.TU.Chr12.917 rna-evm.model.Chr12.917 Chr12 30217661 30238209 uncharacterized protein nan K12839
gene-evm.TU.Chr12.918 rna-evm.model.Chr12.918 Chr12 30251128 30261877 PREDICTED: exocyst complex component 1 nan K02328
gene-evm.TU.Chr12.919 rna-evm.model.Chr12.919 Chr12 30298213 30309151 PREDICTED: Guanylate-binding protein 1 GO:0003924;GO:0005525 K20899

For more detailed data, you can explore the Download section to access the full dataset.