CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.889 rna-evm.model.Chr12.889 Chr12 29460924 29485775 PREDICTED: 10 kDa heat shock protein, mitochondrial GO:0006457 K04078
gene-evm.TU.Chr12.891 rna-evm.model.Chr12.891 Chr12 29529162 29533621 PREDICTED: LOW QUALITY PROTEIN: kielin/chordin-like protein nan K24521
gene-evm.TU.Chr12.892 rna-evm.model.Chr12.892 Chr12 29535122 29547923 uncharacterized protein nan K24521
gene-evm.TU.Chr12.893 rna-evm.model.Chr12.893 Chr12 29661126 29667044 uncharacterized protein nan K10804
gene-evm.TU.Chr12.894 rna-evm.model.Chr12.894 Chr12 29667381 29668100 PREDICTED: Tripartite motif-containing protein 3 nan K10804
gene-evm.TU.Chr12.895 rna-evm.model.Chr12.895 Chr12 29670734 29764452 PREDICTED: Zinc finger protein 208 GO:0003676;GO:0005515 K09228
gene-evm.TU.Chr12.896 rna-evm.model.Chr12.896 Chr12 29772029 29773751 uncharacterized protein nan nan
gene-evm.TU.Chr12.9 rna-evm.model.Chr12.9 Chr12 228319 257556 PREDICTED: Solute carrier family 23 member 1 GO:0016020;GO:0022857;GO:0055085 K14611
gene-evm.TU.Chr12.900 rna-evm.model.Chr12.900 Chr12 29875371 29876312 PREDICTED: Zinc finger protein 862 nan K24642
gene-evm.TU.Chr12.901 rna-evm.model.Chr12.901 Chr12 29876327 29878528 PREDICTED: Zinc finger protein 862 GO:0046983 K24644

For more detailed data, you can explore the Download section to access the full dataset.