CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.874 rna-evm.model.Chr12.874 Chr12 28733855 28740547 PREDICTED: Kelch-like protein 10 GO:0005515 K10448
gene-evm.TU.Chr12.875 rna-evm.model.Chr12.875 Chr12 28745221 28762084 PREDICTED: Protein mono-ADP-ribosyltransferase PARP14 GO:0003950 K15261
gene-evm.TU.Chr12.876 rna-evm.model.Chr12.876 Chr12 28766458 28790175 uncharacterized protein nan K17975
gene-evm.TU.Chr12.878 rna-evm.model.Chr12.878 Chr12 28805186 28805683 PREDICTED: Tigger transposable element-derived protein 6 GO:0003677 K11496
gene-evm.TU.Chr12.879_evm.TU.Chr12.880 rna-evm.model.Chr12.879_evm.model.Chr12.880 Chr12 28829222 29044078 PREDICTED: 5'-AMP-activated protein kinase subunit gamma-2 GO:0032559;GO:0071900 K07200
gene-evm.TU.Chr12.88 rna-evm.model.Chr12.88 Chr12 3376167 3408790 PREDICTED: Multidrug resistance protein 1 GO:0005524;GO:0016020;GO:0016887;GO:0042626;GO:0055085 K05660
gene-evm.TU.Chr12.881 rna-evm.model.Chr12.881 Chr12 29054305 29214519 PREDICTED: Coiled-coil domain-containing protein AGAP005037 nan K19930
gene-evm.TU.Chr12.883 rna-evm.model.Chr12.883.2 Chr12 29233113 29248618 PREDICTED: Pituitary tumor-transforming gene 1 protein-interacting protein nan K26099
gene-evm.TU.Chr12.885 rna-evm.model.Chr12.885 Chr12 29268903 29299079 PREDICTED: Zinc finger protein 26 GO:0003676;GO:0003700;GO:0006355 K09228
gene-evm.TU.Chr12.888 rna-evm.model.Chr12.888 Chr12 29341051 29418853 PREDICTED: 60 kDa heat shock protein, mitochondrial GO:0005524 K04077

For more detailed data, you can explore the Download section to access the full dataset.