CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.86 rna-evm.model.Chr12.86 Chr12 3189530 3190643 PREDICTED: E3 ubiquitin-protein ligase TRIM56 GO:0008270 K12026
gene-evm.TU.Chr12.863 rna-evm.model.Chr12.863 Chr12 28340989 28348747 PREDICTED: Coiled-coil domain-containing protein 173 nan K03646
gene-evm.TU.Chr12.864 rna-evm.model.Chr12.864 Chr12 28351250 28365023 PREDICTED: Post-GPI attachment to proteins factor 3 GO:0006506 K23553
gene-evm.TU.Chr12.865 rna-evm.model.Chr12.865 Chr12 28375119 28459606 PREDICTED: Hemicentin-1 nan K16857
gene-evm.TU.Chr12.866 rna-evm.model.Chr12.866 Chr12 28463717 28486075 PREDICTED: Mucin-like protein (Fragment) nan K16857
gene-evm.TU.Chr12.867 rna-evm.model.Chr12.867 Chr12 28504409 28508272 PREDICTED: Cobalamin binding intrinsic factor nan K14615
gene-evm.TU.Chr12.87 rna-evm.model.Chr12.87 Chr12 3299281 3372151 PREDICTED: Transcriptional repressor NF-X1 GO:0003676;GO:0003700;GO:0005634;GO:0006355;GO:0008270 K12236
gene-evm.TU.Chr12.870 rna-evm.model.Chr12.870 Chr12 28514371 28517855 PREDICTED: Perlucin-like protein nan K06468
gene-evm.TU.Chr12.871 rna-evm.model.Chr12.871 Chr12 28577540 28578356 PREDICTED: Uncharacterized protein in mobD 3'region nan K15353
gene-evm.TU.Chr12.873 rna-evm.model.Chr12.873 Chr12 28717083 28720451 PREDICTED: Perlucin-like protein nan K06468

For more detailed data, you can explore the Download section to access the full dataset.