CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.850 rna-evm.model.Chr12.850 Chr12 28151350 28168004 PREDICTED: calmodulin GO:0005509 K23901
gene-evm.TU.Chr12.851 rna-evm.model.Chr12.851 Chr12 28173218 28185705 PREDICTED: Hypoxanthine-guanine phosphoribosyltransferase GO:0009116 K24196
gene-evm.TU.Chr12.852 rna-evm.model.Chr12.852 Chr12 28194754 28210064 PREDICTED: 1-deoxyxylulose-5-phosphate synthase YajO GO:0016491;GO:0055114 K23107
gene-evm.TU.Chr12.853 rna-evm.model.Chr12.853 Chr12 28210088 28233278 PREDICTED: Sperm-associated antigen 1 GO:0005515 K19870
gene-evm.TU.Chr12.854 rna-evm.model.Chr12.854 Chr12 28242720 28246378 PREDICTED: E3 ubiquitin-protein ligase TRIM56 GO:0008270 K12026
gene-evm.TU.Chr12.855 rna-evm.model.Chr12.855 Chr12 28256629 28259633 uncharacterized protein nan K05762
gene-evm.TU.Chr12.856 rna-evm.model.Chr12.856 Chr12 28277675 28282518 PREDICTED: Tubulin alpha-1A chain GO:0003924;GO:0005200;GO:0005525;GO:0005874;GO:0007017 K07374
gene-evm.TU.Chr12.857 rna-evm.model.Chr12.857 Chr12 28295705 28308381 PREDICTED: Regulator of G-protein signaling 3 GO:0005085;GO:0005515;GO:0035023 K07524
gene-evm.TU.Chr12.858 rna-evm.model.Chr12.858 Chr12 28314402 28323941 PREDICTED: Regulator of G-protein signaling 3 GO:0005085;GO:0005515;GO:0035023 K07524
gene-evm.TU.Chr12.859 rna-evm.model.Chr12.859 Chr12 28333330 28340743 PREDICTED: Pyridoxal phosphate phosphatase PHOSPHO2 GO:0016791 K13248

For more detailed data, you can explore the Download section to access the full dataset.