CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.841 rna-evm.model.Chr12.841 Chr12 28023434 28054465 PREDICTED: Vitamin D3 hydroxylase-associated protein nan K15528
gene-evm.TU.Chr12.842 rna-evm.model.Chr12.842 Chr12 28062544 28064410 PREDICTED: Tubulin alpha-4 chain GO:0003924;GO:0005200;GO:0005525;GO:0005874;GO:0007017 K07374
gene-evm.TU.Chr12.843 rna-evm.model.Chr12.843 Chr12 28064592 28067941 PREDICTED: Tubulin alpha-2/alpha-4 chain GO:0003924;GO:0005200;GO:0005525;GO:0005874;GO:0007017 K07374
gene-evm.TU.Chr12.844 rna-evm.model.Chr12.844 Chr12 28069606 28075212 PREDICTED: Translational activator of cytochrome c oxidase 1 nan K18189
gene-evm.TU.Chr12.845 rna-evm.model.Chr12.845 Chr12 28077619 28084565 uncharacterized protein nan K06296
gene-evm.TU.Chr12.846 rna-evm.model.Chr12.846 Chr12 28088715 28095473 PREDICTED: Solute carrier family 40 member 1 GO:0005381;GO:0016020;GO:0034755 K14685
gene-evm.TU.Chr12.847 rna-evm.model.Chr12.847 Chr12 28112238 28117022 PREDICTED: Solute carrier family 40 member 1 GO:0005381;GO:0016020;GO:0034755 K14685
gene-evm.TU.Chr12.848 rna-evm.model.Chr12.848 Chr12 28121785 28130288 PREDICTED: Zinc finger MYM-type protein 2 nan K24675
gene-evm.TU.Chr12.849 rna-evm.model.Chr12.849 Chr12 28131737 28149335 PREDICTED: WD40 repeat-containing protein SMU1 GO:0005515 K13111
gene-evm.TU.Chr12.85 rna-evm.model.Chr12.85 Chr12 3170925 3174292 PREDICTED: Heat shock 70 kDa protein 12B nan K04044

For more detailed data, you can explore the Download section to access the full dataset.