CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.828 rna-evm.model.Chr12.828 Chr12 27437034 27449536 PREDICTED: Sphingosine-1-phosphate phosphatase 2 nan K04716
gene-evm.TU.Chr12.83 rna-evm.model.Chr12.83 Chr12 3124216 3146553 PREDICTED: Solute carrier family 23 member 1 GO:0016020;GO:0022857;GO:0055085 K14611
gene-evm.TU.Chr12.830 rna-evm.model.Chr12.830.1 Chr12 27469961 27497925 PREDICTED: Serine/threonine-protein kinase tousled-like 2 GO:0004672;GO:0004674;GO:0005524;GO:0005634;GO:0006468 K08864
gene-evm.TU.Chr12.831 rna-evm.model.Chr12.831.1 Chr12 27505821 27513803 uncharacterized protein nan K00906
gene-evm.TU.Chr12.832 rna-evm.model.Chr12.832 Chr12 27551067 27580963 PREDICTED: Calcitonin gene-related peptide type 1 receptor GO:0004888;GO:0004930;GO:0007166;GO:0007186;GO:0016020;GO:0016020 K04577
gene-evm.TU.Chr12.833 rna-evm.model.Chr12.833 Chr12 27606563 27773666 PREDICTED: Calcitonin gene-related peptide type 1 receptor GO:0004888;GO:0004930;GO:0007166;GO:0007186;GO:0016020;GO:0016020 K04577
gene-evm.TU.Chr12.836 rna-evm.model.Chr12.836 Chr12 27967017 27971746 PREDICTED: Protein MB21D2 GO:0005515 K23092
gene-evm.TU.Chr12.837 rna-evm.model.Chr12.837 Chr12 27973568 27977104 PREDICTED: Proline-rich transmembrane protein 1 GO:0016020 K23896
gene-evm.TU.Chr12.84 rna-evm.model.Chr12.84 Chr12 3147821 3169659 PREDICTED: Solute carrier family 23 member 2 GO:0016020;GO:0022857;GO:0055085 K14611
gene-evm.TU.Chr12.840 rna-evm.model.Chr12.840 Chr12 28007454 28017220 PREDICTED: cAMP-responsive element modulator GO:0003677;GO:0003700;GO:0005515;GO:0005634;GO:0006355 K05870

For more detailed data, you can explore the Download section to access the full dataset.