CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.817 rna-evm.model.Chr12.817 Chr12 26757716 26810785 PREDICTED: Fibroblast growth factor receptor 3 GO:0004672;GO:0005515;GO:0005524;GO:0006468 K05099
gene-evm.TU.Chr12.818 rna-evm.model.Chr12.818 Chr12 26817550 26823835 PREDICTED: fibroblast growth factor receptor 3 [EC:2.7.10.1] GO:0005515 K06252
gene-evm.TU.Chr12.819 rna-evm.model.Chr12.819 Chr12 26834020 26836804 PREDICTED: tripartite motif-containing protein 2/3 nan K11997
gene-evm.TU.Chr12.82 rna-evm.model.Chr12.82 Chr12 3062380 3122783 PREDICTED: cAMP-dependent protein kinase regulator nan K04739
gene-evm.TU.Chr12.820 rna-evm.model.Chr12.820 Chr12 26839336 26874315 PREDICTED: Fibroblast growth factor receptor 3 GO:0004672;GO:0005515;GO:0005524;GO:0006468 K05126
gene-evm.TU.Chr12.821 rna-evm.model.Chr12.821 Chr12 26890608 26891832 PREDICTED: BTB/POZ domain-containing protein KCTD1/15 nan nan
gene-evm.TU.Chr12.822 rna-evm.model.Chr12.822 Chr12 26892884 26907653 PREDICTED: Hedgehog-interacting protein nan K24465
gene-evm.TU.Chr12.823 rna-evm.model.Chr12.823 Chr12 26940825 26942574 PREDICTED: mucin-2 nan K16884
gene-evm.TU.Chr12.826 rna-evm.model.Chr12.826 Chr12 27288311 27289020 uncharacterized protein nan nan
gene-evm.TU.Chr12.827 rna-evm.model.Chr12.827 Chr12 27408149 27418787 PREDICTED: EF-hand calcium-binding domain-containing protein 1 GO:0005509 K27179

For more detailed data, you can explore the Download section to access the full dataset.