CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.800 rna-evm.model.Chr12.800 Chr12 26146816 26147160 PREDICTED: E3 ubiquitin-protein ligase TRIM33 GO:0008270 K12026
gene-evm.TU.Chr12.802 rna-evm.model.Chr12.802 Chr12 26227631 26231145 PREDICTED: Di-N-acetylchitobiase nan K12310
gene-evm.TU.Chr12.803 rna-evm.model.Chr12.803 Chr12 26234132 26236928 PREDICTED: E3 ubiquitin-protein ligase TRIM56 nan K12026
gene-evm.TU.Chr12.809 rna-evm.model.Chr12.809 Chr12 26469617 26471053 uncharacterized protein nan K24492
gene-evm.TU.Chr12.810 rna-evm.model.Chr12.810 Chr12 26502137 26504678 PREDICTED: ATP-dependent DNA helicase hus2/rqh1 GO:0003676;GO:0005524 K03654
gene-evm.TU.Chr12.811 rna-evm.model.Chr12.811 Chr12 26505014 26510271 PREDICTED: PHD finger protein ING2 nan K11379
gene-evm.TU.Chr12.812 rna-evm.model.Chr12.812 Chr12 26617160 26633817 PREDICTED: UPF0415 protein C7orf25 homolog nan nan
gene-evm.TU.Chr12.813 rna-evm.model.Chr12.813 Chr12 26637759 26644502 PREDICTED: Aquaporin-11 GO:0015267;GO:0016020;GO:0055085 K09884
gene-evm.TU.Chr12.814 rna-evm.model.Chr12.814 Chr12 26649608 26680474 PREDICTED: Collagen alpha-1(XIV) chain nan K06238
gene-evm.TU.Chr12.815 rna-evm.model.Chr12.815 Chr12 26680950 26683457 PREDICTED: von Willebrand factor A domain-containing protein 2 GO:0005604;GO:0005615 K06238

For more detailed data, you can explore the Download section to access the full dataset.