CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.1736 rna-evm.model.Chr1.1736 Chr1 55166774 55203581 PREDICTED: Aryl hydrocarbon receptor nuclear translocator-like protein 1 GO:0003700;GO:0005634;GO:0005667;GO:0005737;GO:0006355;GO:0046983 K02223
gene-evm.TU.Chr1.1737 rna-evm.model.Chr1.1737 Chr1 55214786 55228561 PREDICTED: E3 ubiquitin-protein ligase RBX1 GO:0008270 K03868
gene-evm.TU.Chr1.1738 rna-evm.model.Chr1.1738 Chr1 55231051 55328377 PREDICTED: F-BAR and double SH3 domains protein 2 GO:0005515 K20125
gene-evm.TU.Chr1.1743 rna-evm.model.Chr1.1743 Chr1 55440380 55463816 PREDICTED: Periostin nan K24790
gene-evm.TU.Chr1.1745 rna-evm.model.Chr1.1745 Chr1 55573330 55576648 PREDICTED: Protein YIPF5 GO:0016020 K20363
gene-evm.TU.Chr1.1746 rna-evm.model.Chr1.1746 Chr1 55629862 55632605 PREDICTED: Immunoglobulin superfamily member 10 GO:0005515 K20230
gene-evm.TU.Chr1.1747 rna-evm.model.Chr1.1747 Chr1 55643635 55657218 PREDICTED: Protein YIPF5 nan K20363
gene-evm.TU.Chr1.1748 rna-evm.model.Chr1.1748 Chr1 55658771 55662870 PREDICTED: 60S ribosomal protein L9 GO:0003735;GO:0005840;GO:0006412;GO:0019843 K02940
gene-evm.TU.Chr1.1749 rna-evm.model.Chr1.1749 Chr1 55673638 55673940 PREDICTED: Transposable element Tcb2 transposase nan K07494
gene-evm.TU.Chr1.1750 rna-evm.model.Chr1.1750 Chr1 55695089 55705446 uncharacterized protein nan K22768

For more detailed data, you can explore the Download section to access the full dataset.