CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.788 rna-evm.model.Chr12.788 Chr12 25696151 25748789 PREDICTED: Formin-like protein GO:0003779;GO:0005884;GO:0008017;GO:0016043;GO:0031267;GO:0030036;GO:0045010 K23957
gene-evm.TU.Chr12.789 rna-evm.model.Chr12.789 Chr12 25765799 25784070 PREDICTED: LPXTG cell wall anchor domain-containing protein GO:0003676 nan
gene-evm.TU.Chr12.79 rna-evm.model.Chr12.79 Chr12 3004388 3006505 PREDICTED: tripartite motif-containing protein 2/3 nan K12026
gene-evm.TU.Chr12.790 rna-evm.model.Chr12.790 Chr12 25793929 25794273 PREDICTED: tripartite motif-containing protein 56 [EC:2.3.2.27] GO:0008270 K12026
gene-evm.TU.Chr12.792 rna-evm.model.Chr12.792 Chr12 25931158 25966099 PREDICTED: Di-N-acetylchitobiase GO:0005975;GO:0008061 K12310
gene-evm.TU.Chr12.793 rna-evm.model.Chr12.793 Chr12 25970910 25974617 PREDICTED: E3 ubiquitin-protein ligase TRIM33 nan K12026
gene-evm.TU.Chr12.795 rna-evm.model.Chr12.795 Chr12 26071183 26080538 PREDICTED: Di-N-acetylchitobiase GO:0005975;GO:0008061;GO:0008270 K12310
gene-evm.TU.Chr12.797 rna-evm.model.Chr12.797 Chr12 26107287 26112967 PREDICTED: Transcription intermediary factor 1-alpha GO:0008270 K12026
gene-evm.TU.Chr12.798 rna-evm.model.Chr12.798 Chr12 26123406 26123750 PREDICTED: Transcription intermediary factor 1-alpha GO:0008270 K12026
gene-evm.TU.Chr12.80 rna-evm.model.Chr12.80 Chr12 3030120 3043776 uncharacterized protein nan K10130

For more detailed data, you can explore the Download section to access the full dataset.