CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.776 rna-evm.model.Chr12.776 Chr12 25353857 25363506 PREDICTED: Tripartite motif-containing protein 2 GO:0008270 K11997
gene-evm.TU.Chr12.778 rna-evm.model.Chr12.778 Chr12 25386029 25386811 PREDICTED: striatin 1/3/4 nan nan
gene-evm.TU.Chr12.78 rna-evm.model.Chr12.78 Chr12 2942557 2943603 PREDICTED: Fer3-like protein GO:0046983 K22400
gene-evm.TU.Chr12.780 rna-evm.model.Chr12.780 Chr12 25491414 25518293 PREDICTED: Protein draper nan K18033
gene-evm.TU.Chr12.781 rna-evm.model.Chr12.781 Chr12 25533280 25541190 PREDICTED: Cation-dependent mannose-6-phosphate receptor nan K10089
gene-evm.TU.Chr12.782 rna-evm.model.Chr12.782 Chr12 25550863 25557963 PREDICTED: Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-B GO:0016020;GO:0016263;GO:0016266;GO:0016757 K00731
gene-evm.TU.Chr12.783 rna-evm.model.Chr12.783.3 Chr12 25610593 25620532 PREDICTED: Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 GO:0016020;GO:0016263;GO:0016266;GO:0016757 K00731
gene-evm.TU.Chr12.785 rna-evm.model.Chr12.785 Chr12 25675657 25678150 uncharacterized protein nan nan
gene-evm.TU.Chr12.786 rna-evm.model.Chr12.786 Chr12 25679213 25681036 PREDICTED: C1q-related factor nan K23284
gene-evm.TU.Chr12.787 rna-evm.model.Chr12.787 Chr12 25681852 25686028 PREDICTED: papilin nan K24522

For more detailed data, you can explore the Download section to access the full dataset.