CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.763 rna-evm.model.Chr12.763 Chr12 25067577 25110313 uncharacterized protein nan nan
gene-evm.TU.Chr12.765 rna-evm.model.Chr12.765 Chr12 25119202 25133872 uncharacterized protein nan K14615
gene-evm.TU.Chr12.766 rna-evm.model.Chr12.766 Chr12 25162077 25170648 PREDICTED: gastric intrinsic factor nan K14615
gene-evm.TU.Chr12.767 rna-evm.model.Chr12.767 Chr12 25183956 25188390 PREDICTED: gastric intrinsic factor nan K14615
gene-evm.TU.Chr12.768 rna-evm.model.Chr12.768 Chr12 25207094 25224681 PREDICTED: gastric intrinsic factor nan K14619
gene-evm.TU.Chr12.77 rna-evm.model.Chr12.77 Chr12 2900483 2920583 PREDICTED: Solute carrier family 23 member 2 GO:0016020;GO:0022857;GO:0055085 K14611
gene-evm.TU.Chr12.770 rna-evm.model.Chr12.770 Chr12 25263899 25266978 PREDICTED: Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 GO:0016020;GO:0016263;GO:0016266;GO:0016757 K00731
gene-evm.TU.Chr12.773 rna-evm.model.Chr12.773 Chr12 25323076 25337809 uncharacterized protein nan K08176
gene-evm.TU.Chr12.774 rna-evm.model.Chr12.774 Chr12 25340217 25345928 PREDICTED: Probable proline iminopeptidase GO:0004177;GO:0005737;GO:0006508;GO:0008233 K01259
gene-evm.TU.Chr12.775 rna-evm.model.Chr12.775 Chr12 25348374 25351912 PREDICTED: Dual specificity protein phosphatase 19 GO:0006470;GO:0008138;GO:0016311;GO:0016791 K14819

For more detailed data, you can explore the Download section to access the full dataset.