CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.753 rna-evm.model.Chr12.753 Chr12 24728949 24759630 PREDICTED: SCO-spondin GO:0005515;GO:0007399;GO:0030154 K24434
gene-evm.TU.Chr12.754 rna-evm.model.Chr12.754 Chr12 24803509 24857577 PREDICTED: Coadhesin (Fragment) GO:0005515 K16857
gene-evm.TU.Chr12.756 rna-evm.model.Chr12.756 Chr12 24875104 24882333 uncharacterized protein nan nan
gene-evm.TU.Chr12.757 rna-evm.model.Chr12.757 Chr12 24882331 24896030 PREDICTED: Protein white GO:0005524;GO:0016020;GO:0016887 K21396
gene-evm.TU.Chr12.758 rna-evm.model.Chr12.758 Chr12 24899834 24912314 PREDICTED: Protein white GO:0005524;GO:0016020;GO:0016887 K21396
gene-evm.TU.Chr12.759 rna-evm.model.Chr12.759 Chr12 24916400 24918053 PREDICTED: Lithostathine-1-beta nan K06468
gene-evm.TU.Chr12.76 rna-evm.model.Chr12.76 Chr12 2881285 2893405 PREDICTED: pre-mRNA-splicing factor CWC22 homolog nan K04467
gene-evm.TU.Chr12.760 rna-evm.model.Chr12.760 Chr12 24921522 24922094 uncharacterized protein nan K06722
gene-evm.TU.Chr12.761 rna-evm.model.Chr12.761 Chr12 24931013 24988789 PREDICTED: Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A GO:0005515 K15502
gene-evm.TU.Chr12.762 rna-evm.model.Chr12.762 Chr12 24990859 24997204 uncharacterized protein nan K10089

For more detailed data, you can explore the Download section to access the full dataset.