CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.74 rna-evm.model.Chr12.74 Chr12 2773506 2848535 PREDICTED: fibroblast growth factor receptor 3 [EC:2.7.10.1] nan K03900
gene-evm.TU.Chr12.740 rna-evm.model.Chr12.740 Chr12 23553102 23570701 PREDICTED: Fibropellin-3 GO:0005509 K02599
gene-evm.TU.Chr12.741 rna-evm.model.Chr12.741 Chr12 23573198 23679063 PREDICTED: Transcription-associated protein 1 GO:0000123;GO:0005515;GO:0005634;GO:0016573 K08874
gene-evm.TU.Chr12.742 rna-evm.model.Chr12.742 Chr12 23872140 23873220 PREDICTED: coatomer subunit beta' nan K08757
gene-evm.TU.Chr12.744 rna-evm.model.Chr12.744 Chr12 23959987 23961176 PREDICTED: GRB2-associated-binding protein 1 nan nan
gene-evm.TU.Chr12.746 rna-evm.model.Chr12.746 Chr12 24166074 24192217 PREDICTED: Transformation/transcription domain-associated protein GO:0000123;GO:0005515;GO:0005634;GO:0016573 K08874
gene-evm.TU.Chr12.749 rna-evm.model.Chr12.749 Chr12 24572896 24613144 PREDICTED: Semaphorin-5A nan K16857
gene-evm.TU.Chr12.750 rna-evm.model.Chr12.750 Chr12 24616242 24617939 PREDICTED: echinoderm microtubule-associated protein-like 6 nan K26608
gene-evm.TU.Chr12.751 rna-evm.model.Chr12.751 Chr12 24621168 24629175 PREDICTED: C1q-related factor nan K23284
gene-evm.TU.Chr12.752 rna-evm.model.Chr12.752 Chr12 24669176 24723180 PREDICTED: PAN2-PAN3 deadenylation complex catalytic subunit PAN2 nan K12571

For more detailed data, you can explore the Download section to access the full dataset.