CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.725 rna-evm.model.Chr12.725 Chr12 23178678 23192718 PREDICTED: Probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial GO:0002949;GO:0004222 K01409
gene-evm.TU.Chr12.726 rna-evm.model.Chr12.726 Chr12 23195835 23198670 PREDICTED: M-phase-specific PLK1-interacting protein-like nan K24575
gene-evm.TU.Chr12.727 rna-evm.model.Chr12.727 Chr12 23202440 23210830 PREDICTED: Zinc finger protein 226 GO:0003676 K22402
gene-evm.TU.Chr12.728 rna-evm.model.Chr12.728 Chr12 23212623 23213107 uncharacterized protein nan nan
gene-evm.TU.Chr12.729 rna-evm.model.Chr12.729 Chr12 23262960 23263667 PREDICTED: Exodeoxyribonuclease III nan nan
gene-evm.TU.Chr12.73 rna-evm.model.Chr12.73 Chr12 2743204 2769750 PREDICTED: Tyrosine-protein kinase transforming protein SEA GO:0004672;GO:0005515;GO:0005524;GO:0006468 K05094
gene-evm.TU.Chr12.733 rna-evm.model.Chr12.733 Chr12 23339819 23345814 uncharacterized protein GO:0016020 K23896
gene-evm.TU.Chr12.734 rna-evm.model.Chr12.734 Chr12 23356311 23363341 uncharacterized protein GO:0016020 K23897
gene-evm.TU.Chr12.735 rna-evm.model.Chr12.735 Chr12 23407612 23408407 uncharacterized protein GO:0016020 K23897
gene-evm.TU.Chr12.737 rna-evm.model.Chr12.737.2 Chr12 23475555 23505814 PREDICTED: Leucine-rich repeat flightless-interacting protein 2 GO:0006355 K26434

For more detailed data, you can explore the Download section to access the full dataset.