CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.716 rna-evm.model.Chr12.716 Chr12 22995405 23005368 PREDICTED: Sulfotransferase family cytosolic 1B member 1 GO:0008146 K01016
gene-evm.TU.Chr12.717 rna-evm.model.Chr12.717 Chr12 23008617 23026437 PREDICTED: cation-dependent mannose-6-phosphate receptor nan K10089
gene-evm.TU.Chr12.718 rna-evm.model.Chr12.718 Chr12 23028888 23031610 PREDICTED: Pancreas transcription factor 1 subunit alpha GO:0046983 K09073
gene-evm.TU.Chr12.719 rna-evm.model.Chr12.719 Chr12 23077981 23101478 PREDICTED: Transcription factor 15 GO:0046983 K09070
gene-evm.TU.Chr12.72 rna-evm.model.Chr12.72 Chr12 2659726 2713940 PREDICTED: Tyrosine-protein kinase CSK GO:0004672;GO:0005515;GO:0005524;GO:0006468 K05094
gene-evm.TU.Chr12.720 rna-evm.model.Chr12.720 Chr12 23086702 23087704 PREDICTED: Ribosomally synthesized cyclic peptide ustiloxin B precursosr nan K24595
gene-evm.TU.Chr12.721 rna-evm.model.Chr12.721 Chr12 23107391 23122562 PREDICTED: Uracil-DNA glycosylase GO:0004844;GO:0006281;GO:0006284 K03648
gene-evm.TU.Chr12.722 rna-evm.model.Chr12.722 Chr12 23130018 23145756 PREDICTED: Uracil-DNA glycosylase GO:0004844;GO:0006281;GO:0006284 K03648
gene-evm.TU.Chr12.723 rna-evm.model.Chr12.723 Chr12 23152143 23159383 PREDICTED: Uracil-DNA glycosylase GO:0004844;GO:0006281;GO:0006284 K03648
gene-evm.TU.Chr12.724 rna-evm.model.Chr12.724 Chr12 23162864 23178448 PREDICTED: Glycine--tRNA ligase GO:0000166;GO:0004812;GO:0004820;GO:0005524;GO:0005737;GO:0006418;GO:0006426 K01880

For more detailed data, you can explore the Download section to access the full dataset.