CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.1717 rna-evm.model.Chr1.1717 Chr1 54815803 54857734 uncharacterized protein nan K12712
gene-evm.TU.Chr1.1718 rna-evm.model.Chr1.1718 Chr1 54882703 54900352 PREDICTED: Sodium- and chloride-dependent GABA transporter 2 GO:0016020 K05041
gene-evm.TU.Chr1.1720 rna-evm.model.Chr1.1720 Chr1 54944478 54949813 PREDICTED: Collagen alpha-2(VIII) chain nan K23284
gene-evm.TU.Chr1.1721 rna-evm.model.Chr1.1721 Chr1 54962433 54975677 PREDICTED: Heavy metal-binding protein HIP nan K23284
gene-evm.TU.Chr1.1730 rna-evm.model.Chr1.1730 Chr1 55062601 55067573 PREDICTED: 6-deoxyerythronolide-B synthase EryA1, modules 1 and 2 nan K12434
gene-evm.TU.Chr1.1731 rna-evm.model.Chr1.1731 Chr1 55067579 55074901 PREDICTED: Mycocerosic acid synthase nan K15642
gene-evm.TU.Chr1.1732 rna-evm.model.Chr1.1732 Chr1 55081920 55082654 PREDICTED: Patched domain-containing protein 3 GO:0016020;GO:0016020;GO:0022857;GO:0055085 K24682
gene-evm.TU.Chr1.1733 rna-evm.model.Chr1.1733 Chr1 55082688 55083851 PREDICTED: Patched domain-containing protein 3 GO:0016020 K24682
gene-evm.TU.Chr1.1734 rna-evm.model.Chr1.1734 Chr1 55083899 55085338 PREDICTED: Patched domain-containing protein 3 GO:0016020 K24682
gene-evm.TU.Chr1.1735 rna-evm.model.Chr1.1735 Chr1 55090285 55133535 PREDICTED: Phthiocerol/phenolphthiocerol synthesis polyketide synthase type I PpsD nan K12434

For more detailed data, you can explore the Download section to access the full dataset.