CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.63 rna-evm.model.Chr12.63 Chr12 2505529 2513080 PREDICTED: Tubulin alpha-3 chain GO:0003924;GO:0005200;GO:0005525;GO:0005874;GO:0007017 K07374
gene-evm.TU.Chr12.631 rna-evm.model.Chr12.631 Chr12 20055238 20061743 PREDICTED: DNA polymerase III PolC-type nan K02342
gene-evm.TU.Chr12.632 rna-evm.model.Chr12.632 Chr12 20228774 20230279 PREDICTED: Baculoviral IAP repeat-containing protein 7-B nan K04725
gene-evm.TU.Chr12.633 rna-evm.model.Chr12.633 Chr12 20255730 20260284 uncharacterized protein nan nan
gene-evm.TU.Chr12.635 rna-evm.model.Chr12.635.1 Chr12 20274081 20281824 uncharacterized protein nan K07344
gene-evm.TU.Chr12.636 rna-evm.model.Chr12.636 Chr12 20341244 20347204 PREDICTED: Dipeptidase 2 GO:0006508;GO:0016805 K01273
gene-evm.TU.Chr12.639 rna-evm.model.Chr12.639 Chr12 20369448 20370137 PREDICTED: Protein unc-13 homolog C nan K12542
gene-evm.TU.Chr12.64 rna-evm.model.Chr12.64 Chr12 2513498 2538750 PREDICTED: Peroxisomal bifunctional enzyme GO:0003824;GO:0003857;GO:0006631;GO:0016491;GO:0055114 K07514
gene-evm.TU.Chr12.640 rna-evm.model.Chr12.640 Chr12 20372389 20400536 PREDICTED: Integral membrane protein GPR155 GO:0016020;GO:0035556;GO:0055085 K13936
gene-evm.TU.Chr12.641 rna-evm.model.Chr12.641 Chr12 20422814 20445228 PREDICTED: Verprolin GO:0003779 K19475

For more detailed data, you can explore the Download section to access the full dataset.