CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.60 rna-evm.model.Chr12.60 Chr12 2481959 2483169 uncharacterized protein nan K03128
gene-evm.TU.Chr12.601 rna-evm.model.Chr12.601 Chr12 19210378 19210742 uncharacterized protein nan nan
gene-evm.TU.Chr12.603 rna-evm.model.Chr12.603 Chr12 19306979 19308322 PREDICTED: BTB/POZ domain-containing protein KCTD1/15 nan nan
gene-evm.TU.Chr12.604 rna-evm.model.Chr12.604 Chr12 19314569 19315365 uncharacterized protein nan nan
gene-evm.TU.Chr12.605 rna-evm.model.Chr12.605 Chr12 19344909 19388666 PREDICTED: Baculoviral IAP repeat-containing protein 7 nan K16060
gene-evm.TU.Chr12.606 rna-evm.model.Chr12.606 Chr12 19391094 19397486 PREDICTED: E3 ubiquitin-protein ligase IAP-3 nan K21504
gene-evm.TU.Chr12.607 rna-evm.model.Chr12.607 Chr12 19421651 19438885 PREDICTED: Dipeptidase 1 GO:0006508;GO:0016805 K01273
gene-evm.TU.Chr12.61 rna-evm.model.Chr12.61 Chr12 2483587 2491298 PREDICTED: Three prime repair exonuclease 2 nan K10790
gene-evm.TU.Chr12.610 rna-evm.model.Chr12.610 Chr12 19463061 19504111 PREDICTED: Integral membrane protein GPR155 GO:0016020;GO:0035556;GO:0055085 K13936
gene-evm.TU.Chr12.611 rna-evm.model.Chr12.611 Chr12 19518967 19542718 PREDICTED: Verprolin GO:0003779 K19475

For more detailed data, you can explore the Download section to access the full dataset.