CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.653 rna-evm.model.Chr12.653 Chr12 20590930 20603608 PREDICTED: 60 kDa SS-A/Ro ribonucleoprotein GO:0003723 K11089
gene-evm.TU.Chr12.655 rna-evm.model.Chr12.655 Chr12 20649259 20713788 uncharacterized protein nan K09732
gene-evm.TU.Chr12.656 rna-evm.model.Chr12.656 Chr12 20740174 20771381 uncharacterized protein nan K15867
gene-evm.TU.Chr12.657 rna-evm.model.Chr12.657 Chr12 20779487 20796377 PREDICTED: Integrin alpha-4 GO:0007155;GO:0008305 K06483
gene-evm.TU.Chr12.658 rna-evm.model.Chr12.658 Chr12 20796529 20800512 PREDICTED: integrin alpha 9 nan K06483
gene-evm.TU.Chr12.659 rna-evm.model.Chr12.659 Chr12 20807379 20855615 PREDICTED: Integrin alpha-9 GO:0007155;GO:0008305 K06483
gene-evm.TU.Chr12.66_evm.TU.Chr12.67 rna-evm.model.Chr12.66_evm.model.Chr12.67 Chr12 2548008 2568122 PREDICTED: F-box/LRR-repeat protein 4 GO:0005515 K10270
gene-evm.TU.Chr12.660 rna-evm.model.Chr12.660 Chr12 21134641 21168591 uncharacterized protein nan nan
gene-evm.TU.Chr12.661 rna-evm.model.Chr12.661 Chr12 21168877 21208284 PREDICTED: Corticotropin-releasing factor receptor 2 GO:0004888;GO:0004930;GO:0007166;GO:0007186;GO:0016020;GO:0016020 K04579
gene-evm.TU.Chr12.663 rna-evm.model.Chr12.663 Chr12 21312312 21314300 uncharacterized protein nan K23729

For more detailed data, you can explore the Download section to access the full dataset.