CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.56 rna-evm.model.Chr12.56 Chr12 2405779 2427356 PREDICTED: trichohyalin nan K14437
gene-evm.TU.Chr12.560 rna-evm.model.Chr12.560 Chr12 17285359 17298145 uncharacterized protein nan nan
gene-evm.TU.Chr12.563 rna-evm.model.Chr12.563 Chr12 17599763 17627775 PREDICTED: Corticotropin-releasing factor receptor 2 GO:0004888;GO:0004930;GO:0007166;GO:0007186;GO:0016020;GO:0016020 K04579
gene-evm.TU.Chr12.565 rna-evm.model.Chr12.565 Chr12 17828420 17835382 PREDICTED: sporulation-specific protein 15-like nan K07184
gene-evm.TU.Chr12.566 rna-evm.model.Chr12.566 Chr12 18116065 18136400 PREDICTED: receptor-type tyrosine-protein phosphatase T [EC:3.1.3.48] nan K24068
gene-evm.TU.Chr12.567 rna-evm.model.Chr12.567 Chr12 18137246 18138134 PREDICTED: Tyrosine-protein kinase receptor Tie-2 nan K24333
gene-evm.TU.Chr12.569 rna-evm.model.Chr12.569 Chr12 18172222 18211140 PREDICTED: Scavenger receptor cysteine-rich domain-containing group B protein GO:0005044;GO:0016020 K23489
gene-evm.TU.Chr12.57 rna-evm.model.Chr12.57 Chr12 2428982 2436248 PREDICTED: mucin-19-like nan K21864
gene-evm.TU.Chr12.571 rna-evm.model.Chr12.571 Chr12 18240927 18244383 PREDICTED: Synaptosomal-associated protein 47 nan K18212
gene-evm.TU.Chr12.572 rna-evm.model.Chr12.572 Chr12 18249176 18288956 PREDICTED: ATP-binding cassette sub-family B member 6, mitochondrial GO:0005524;GO:0016020;GO:0016887;GO:0042626;GO:0055085 K05661

For more detailed data, you can explore the Download section to access the full dataset.