CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.642 rna-evm.model.Chr12.642 Chr12 20452429 20453049 PREDICTED: BTB/POZ domain-containing protein 6 nan K10478
gene-evm.TU.Chr12.644 rna-evm.model.Chr12.644 Chr12 20493380 20501295 PREDICTED: Sorbitol dehydrogenase GO:0016491;GO:0055114 K00008
gene-evm.TU.Chr12.645 rna-evm.model.Chr12.645 Chr12 20503299 20505210 PREDICTED: tripartite motif-containing protein 2/3 nan K12026
gene-evm.TU.Chr12.647 rna-evm.model.Chr12.647 Chr12 20508082 20516098 PREDICTED: Aldo-keto reductase family 1 member A1-A GO:0016491;GO:0055114 K00002
gene-evm.TU.Chr12.648 rna-evm.model.Chr12.648 Chr12 20527500 20538943 PREDICTED: Putative cytochrome b561 GO:0005765;GO:0016491;GO:0031902;GO:0046872 K08360
gene-evm.TU.Chr12.649 rna-evm.model.Chr12.649 Chr12 20550243 20553088 uncharacterized protein nan K24492
gene-evm.TU.Chr12.65 rna-evm.model.Chr12.65 Chr12 2540006 2543871 PREDICTED: F-box/LRR-repeat protein 4 nan K10270
gene-evm.TU.Chr12.650 rna-evm.model.Chr12.650 Chr12 20553134 20562160 PREDICTED: 60 kDa SS-A/Ro ribonucleoprotein GO:0003723 K11089
gene-evm.TU.Chr12.651 rna-evm.model.Chr12.651 Chr12 20564744 20574726 PREDICTED: 60 kDa SS-A/Ro ribonucleoprotein GO:0003723 K11089
gene-evm.TU.Chr12.652 rna-evm.model.Chr12.652 Chr12 20580073 20589400 PREDICTED: 60 kDa SS-A/Ro ribonucleoprotein GO:0003723 K11089

For more detailed data, you can explore the Download section to access the full dataset.