CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.68 rna-evm.model.Chr12.68 Chr12 2581472 2583209 PREDICTED: Cyclin-dependent kinase 5 activator 1 GO:0016533;GO:0061575 K11716
gene-evm.TU.Chr12.680 rna-evm.model.Chr12.680.1 Chr12 21851881 21889107 PREDICTED: Kinesin heavy chain GO:0003777;GO:0005524;GO:0007018;GO:0008017 K10396
gene-evm.TU.Chr12.681 rna-evm.model.Chr12.681 Chr12 21892766 21893272 uncharacterized protein nan nan
gene-evm.TU.Chr12.682 rna-evm.model.Chr12.682 Chr12 21908924 21913465 PREDICTED: Protein yellow nan K22203
gene-evm.TU.Chr12.684 rna-evm.model.Chr12.684 Chr12 21938979 21959053 uncharacterized protein nan K27164
gene-evm.TU.Chr12.685 rna-evm.model.Chr12.685 Chr12 21968263 21971619 PREDICTED: Myb/SANT-like DNA-binding domain-containing protein 2 nan K01587
gene-evm.TU.Chr12.686 rna-evm.model.Chr12.686 Chr12 21976866 22000593 PREDICTED: Glycylpeptide N-tetradecanoyltransferase 2 GO:0004379;GO:0006499 K00671
gene-evm.TU.Chr12.687 rna-evm.model.Chr12.687 Chr12 22003316 22140352 PREDICTED: Adenylate cyclase type 1 GO:0004016;GO:0005886;GO:0006171;GO:0009190;GO:0016849;GO:0035556 K08041
gene-evm.TU.Chr12.688 rna-evm.model.Chr12.688 Chr12 22256240 22269646 PREDICTED: Chondroitin sulfate synthase 2 GO:0008376;GO:0032580 K00747
gene-evm.TU.Chr12.689_evm.TU.Chr12.690 rna-evm.model.Chr12.689_evm.model.Chr12.690 Chr12 22277185 22301809 PREDICTED: Probable ATP-dependent RNA helicase DDX23 GO:0003676;GO:0005524 K12858

For more detailed data, you can explore the Download section to access the full dataset.