CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.615 rna-evm.model.Chr12.615 Chr12 19612049 19620243 PREDICTED: Sorbitol dehydrogenase GO:0016491;GO:0055114 K00008
gene-evm.TU.Chr12.617 rna-evm.model.Chr12.617 Chr12 19632724 19634743 PREDICTED: E3 ubiquitin-protein ligase TRIM33 nan K12026
gene-evm.TU.Chr12.618 rna-evm.model.Chr12.618 Chr12 19635201 19643244 PREDICTED: Aldo-keto reductase family 1 member A1-A GO:0016491;GO:0055114 K00002
gene-evm.TU.Chr12.619 rna-evm.model.Chr12.619 Chr12 19651176 19661611 PREDICTED: Putative cytochrome b561 GO:0005765;GO:0016491;GO:0031902;GO:0046872 K08360
gene-evm.TU.Chr12.62 rna-evm.model.Chr12.62 Chr12 2500615 2502902 PREDICTED: Three prime repair exonuclease 2 nan K10790
gene-evm.TU.Chr12.621 rna-evm.model.Chr12.621 Chr12 19673924 19681693 PREDICTED: 60 kDa SS-A/Ro ribonucleoprotein GO:0003723 K11089
gene-evm.TU.Chr12.624 rna-evm.model.Chr12.624 Chr12 19684141 19713813 PREDICTED: 60 kDa SS-A/Ro ribonucleoprotein GO:0003723 K11089
gene-evm.TU.Chr12.625 rna-evm.model.Chr12.625 Chr12 19715418 19725640 PREDICTED: 60 kDa SS-A/Ro ribonucleoprotein GO:0003723 K11089
gene-evm.TU.Chr12.628 rna-evm.model.Chr12.628 Chr12 19867217 19889082 PREDICTED: Integrin alpha-4 GO:0007155;GO:0008305 K06483
gene-evm.TU.Chr12.629 rna-evm.model.Chr12.629 Chr12 19894949 19932580 PREDICTED: Integrin alpha-9 GO:0007155;GO:0008305 K06483

For more detailed data, you can explore the Download section to access the full dataset.