CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.573 rna-evm.model.Chr12.573 Chr12 18291882 18310788 PREDICTED: ADP-ribosylation factor-like protein 5B GO:0005525 K07950
gene-evm.TU.Chr12.574 rna-evm.model.Chr12.574 Chr12 18320329 18320691 PREDICTED: Putative apoptosis inhibitor ORF99 nan K16061
gene-evm.TU.Chr12.576 rna-evm.model.Chr12.576 Chr12 18322366 18322758 PREDICTED: NACHT, LRR and PYD domains-containing protein 3 nan K11587
gene-evm.TU.Chr12.577 rna-evm.model.Chr12.577 Chr12 18333179 18333571 PREDICTED: NACHT, LRR and PYD domains-containing protein 3 nan K11587
gene-evm.TU.Chr12.579 rna-evm.model.Chr12.579 Chr12 18335241 18335603 PREDICTED: Putative apoptosis inhibitor ORF99 nan K16061
gene-evm.TU.Chr12.58 rna-evm.model.Chr12.58 Chr12 2462904 2473794 PREDICTED: tripartite motif-containing protein 71 [EC:2.3.2.27] nan K07133
gene-evm.TU.Chr12.581 rna-evm.model.Chr12.581 Chr12 18389109 18399522 PREDICTED: cAMP-dependent protein kinase regulator nan K19477
gene-evm.TU.Chr12.584 rna-evm.model.Chr12.584 Chr12 18406992 18416636 uncharacterized protein GO:0008270 nan
gene-evm.TU.Chr12.585 rna-evm.model.Chr12.585 Chr12 18420016 18420405 PREDICTED: E3 ubiquitin-protein ligase UBR2 [EC:2.3.2.27] nan K07494
gene-evm.TU.Chr12.586 rna-evm.model.Chr12.586 Chr12 18421644 18451570 PREDICTED: GATOR complex protein MIOS-A GO:0005515 K20407

For more detailed data, you can explore the Download section to access the full dataset.