CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.587 rna-evm.model.Chr12.587 Chr12 18454684 18463141 PREDICTED: Cytochrome P450 1A1 nan nan
gene-evm.TU.Chr12.589 rna-evm.model.Chr12.589 Chr12 18544652 18735078 PREDICTED: Polycystic kidney disease protein 1-like 1 nan K04987
gene-evm.TU.Chr12.59 rna-evm.model.Chr12.59 Chr12 2480178 2481222 PREDICTED: nuclease HARBI1 [EC:3.1.-.-] nan K23222
gene-evm.TU.Chr12.590 rna-evm.model.Chr12.590 Chr12 18857408 18869525 PREDICTED: Ceramide kinase-like protein GO:0016301 K19602
gene-evm.TU.Chr12.591 rna-evm.model.Chr12.591 Chr12 18879863 18923213 PREDICTED: Ceramide synthase 2 GO:0003677;GO:0016020 K23727
gene-evm.TU.Chr12.592 rna-evm.model.Chr12.592.1 Chr12 18987716 18992473 PREDICTED: PE family protein nan K17556
gene-evm.TU.Chr12.594 rna-evm.model.Chr12.594 Chr12 19035549 19053058 PREDICTED: BTB/POZ domain-containing protein KCTD1/15 nan K24675
gene-evm.TU.Chr12.595 rna-evm.model.Chr12.595 Chr12 19064350 19065786 uncharacterized protein nan nan
gene-evm.TU.Chr12.596 rna-evm.model.Chr12.596 Chr12 19066276 19067193 uncharacterized protein nan nan
gene-evm.TU.Chr12.6 rna-evm.model.Chr12.6 Chr12 127959 128970 PREDICTED: 14-3-3 protein homolog GO:0019904 K06630

For more detailed data, you can explore the Download section to access the full dataset.