CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.665 rna-evm.model.Chr12.665 Chr12 21400992 21403966 uncharacterized protein nan nan
gene-evm.TU.Chr12.666 rna-evm.model.Chr12.666 Chr12 21408312 21410420 uncharacterized protein nan K24836
gene-evm.TU.Chr12.668 rna-evm.model.Chr12.668 Chr12 21585834 21587222 PREDICTED: Lysyl oxidase homolog 4 GO:0005044;GO:0016020 K09624
gene-evm.TU.Chr12.670 rna-evm.model.Chr12.670 Chr12 21613113 21616968 PREDICTED: Short-chain collagen C4 (Fragment) nan K11037
gene-evm.TU.Chr12.671 rna-evm.model.Chr12.671 Chr12 21627262 21661915 PREDICTED: Tubulin polyglutamylase TTLL4 GO:0036211;GO:0018095 K16601
gene-evm.TU.Chr12.672 rna-evm.model.Chr12.672 Chr12 21688430 21692783 PREDICTED: Succinate dehydrogenase cytochrome b560 subunit, mitochondrial GO:0016627 K00236
gene-evm.TU.Chr12.673 rna-evm.model.Chr12.673 Chr12 21699408 21734439 PREDICTED: Transmembrane protein 198 GO:0090263 K01992
gene-evm.TU.Chr12.677 rna-evm.model.Chr12.677 Chr12 21767099 21778437 PREDICTED: 26S proteasome regulatory subunit 8 GO:0005524 K03066
gene-evm.TU.Chr12.678 rna-evm.model.Chr12.678 Chr12 21785491 21792275 PREDICTED: Splicing factor ESS-2 homolog nan K13118
gene-evm.TU.Chr12.679 rna-evm.model.Chr12.679 Chr12 21819747 21847676 PREDICTED: Peroxisomal carnitine O-octanoyltransferase GO:0016746 K05940

For more detailed data, you can explore the Download section to access the full dataset.