CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.550 rna-evm.model.Chr12.550 Chr12 16530209 16530898 uncharacterized protein nan K07499
gene-evm.TU.Chr12.551 rna-evm.model.Chr12.551 Chr12 16531886 16585210 PREDICTED: GATOR complex protein MIOS-B GO:0005515 K20407
gene-evm.TU.Chr12.552 rna-evm.model.Chr12.552 Chr12 16611919 16613044 uncharacterized protein nan K20058
gene-evm.TU.Chr12.553 rna-evm.model.Chr12.553 Chr12 16648162 16648701 uncharacterized protein nan K23070
gene-evm.TU.Chr12.554 rna-evm.model.Chr12.554 Chr12 16675521 16929537 PREDICTED: Polycystic kidney disease 1-related protein (Fragment) GO:0005515 K04987
gene-evm.TU.Chr12.555 rna-evm.model.Chr12.555 Chr12 17020761 17023229 PREDICTED: Zinc finger protein 862 GO:0046983 K24644
gene-evm.TU.Chr12.556 rna-evm.model.Chr12.556 Chr12 17052366 17065105 PREDICTED: Ceramide kinase-like protein GO:0016301 K19602
gene-evm.TU.Chr12.557 rna-evm.model.Chr12.557 Chr12 17074355 17088548 PREDICTED: Ceramide synthase 2 GO:0016020 K23727
gene-evm.TU.Chr12.558 rna-evm.model.Chr12.558 Chr12 17174739 17182885 PREDICTED: solute carrier family 15, member 5 GO:0015074 K07497
gene-evm.TU.Chr12.559 rna-evm.model.Chr12.559 Chr12 17184803 17192801 PREDICTED: G2/M phase-specific E3 ubiquitin-protein ligase [EC:2.3.2.26] GO:0004842 K22371

For more detailed data, you can explore the Download section to access the full dataset.