CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.17 rna-evm.model.Chr1.17 Chr1 656566 657346 PREDICTED: glutamate receptor delta-1 subunit nan K15983
gene-evm.TU.Chr1.170 rna-evm.model.Chr1.170 Chr1 5528043 5540645 PREDICTED: Zonadhesin GO:0005509;GO:0006851 K23843
gene-evm.TU.Chr1.1704 rna-evm.model.Chr1.1704 Chr1 53901628 53903548 PREDICTED: Prestin GO:0008271;GO:0008272;GO:0015116;GO:0016020;GO:0016020;GO:0055085 K14703
gene-evm.TU.Chr1.1705 rna-evm.model.Chr1.1705 Chr1 53906013 53943909 PREDICTED: Phosphatidylcholine translocator ABCB4 GO:0005524;GO:0016020;GO:0016887;GO:0042626;GO:0055085 K05658
gene-evm.TU.Chr1.171 rna-evm.model.Chr1.171 Chr1 5540908 5542739 PREDICTED: Autotransporter adhesin BpaC nan K14590
gene-evm.TU.Chr1.1711 rna-evm.model.Chr1.1711 Chr1 54246626 54375982 PREDICTED: E3 ubiquitin-protein ligase rnf213-alpha GO:0004842;GO:0016887 K22754
gene-evm.TU.Chr1.1712 rna-evm.model.Chr1.1712 Chr1 54380710 54411701 PREDICTED: Sorting nexin-5 GO:0035091 K17920
gene-evm.TU.Chr1.1713 rna-evm.model.Chr1.1713 Chr1 54434976 54513530 PREDICTED: E3 ubiquitin-protein ligase rnf213-alpha GO:0004842;GO:0016887 K22754
gene-evm.TU.Chr1.1714 rna-evm.model.Chr1.1714 Chr1 54513926 54553858 PREDICTED: E3 ubiquitin-protein ligase rnf213-alpha GO:0004842;GO:0016887 K22754
gene-evm.TU.Chr1.1715 rna-evm.model.Chr1.1715 Chr1 54584813 54630566 PREDICTED: Halomucin GO:0004842;GO:0005515 K22371

For more detailed data, you can explore the Download section to access the full dataset.