CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.536 rna-evm.model.Chr12.536 Chr12 16318072 16322464 PREDICTED: Glutamine-rich protein 2 nan K25758
gene-evm.TU.Chr12.537 rna-evm.model.Chr12.537 Chr12 16331903 16338328 PREDICTED: Scavenger receptor cysteine-rich type 1 protein M130 GO:0005044;GO:0016020 K09624
gene-evm.TU.Chr12.539 rna-evm.model.Chr12.539 Chr12 16363680 16366633 PREDICTED: polycystin 1L1 nan K12028
gene-evm.TU.Chr12.54 rna-evm.model.Chr12.54 Chr12 2364586 2395865 PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component GO:0003924;GO:0005525 K12852
gene-evm.TU.Chr12.542 rna-evm.model.Chr12.542 Chr12 16406039 16409701 PREDICTED: Synaptosomal-associated protein 47 nan K18212
gene-evm.TU.Chr12.543 rna-evm.model.Chr12.543 Chr12 16415400 16432685 PREDICTED: ATP-binding cassette sub-family B member 6, mitochondrial GO:0005524;GO:0016020;GO:0016887;GO:0042626;GO:0055085 K05661
gene-evm.TU.Chr12.544 rna-evm.model.Chr12.544 Chr12 16435712 16453278 PREDICTED: ADP-ribosylation factor-like protein 5B GO:0005525 K07950
gene-evm.TU.Chr12.545 rna-evm.model.Chr12.545 Chr12 16475941 16482121 uncharacterized protein nan nan
gene-evm.TU.Chr12.548 rna-evm.model.Chr12.548 Chr12 16523248 16524138 uncharacterized protein nan nan
gene-evm.TU.Chr12.55 rna-evm.model.Chr12.55 Chr12 2396994 2397329 uncharacterized protein nan nan

For more detailed data, you can explore the Download section to access the full dataset.