CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.517 rna-evm.model.Chr12.517 Chr12 15428243 15439163 uncharacterized protein nan nan
gene-evm.TU.Chr12.519 rna-evm.model.Chr12.519 Chr12 15444966 15446268 PREDICTED: Zinc finger protein 668 GO:0003676 K22534
gene-evm.TU.Chr12.52 rna-evm.model.Chr12.52 Chr12 2320976 2328649 uncharacterized protein nan K01142
gene-evm.TU.Chr12.520 rna-evm.model.Chr12.520 Chr12 15484600 15484811 uncharacterized protein nan nan
gene-evm.TU.Chr12.521 rna-evm.model.Chr12.521 Chr12 15484833 15576200 PREDICTED: Corticotropin-releasing factor receptor 2 GO:0004888;GO:0004930;GO:0007166;GO:0007186;GO:0016020;GO:0016020 K04578
gene-evm.TU.Chr12.522 rna-evm.model.Chr12.522 Chr12 15736523 15737397 PREDICTED: codanin-1 nan nan
gene-evm.TU.Chr12.524 rna-evm.model.Chr12.524 Chr12 16038745 16040544 PREDICTED: sentrin-specific protease 1 [EC:3.4.22.68] nan K22513
gene-evm.TU.Chr12.528 rna-evm.model.Chr12.528 Chr12 16130958 16145021 PREDICTED: E3 ubiquitin-protein ligase TRIM33 GO:0008270 K12026
gene-evm.TU.Chr12.53 rna-evm.model.Chr12.53 Chr12 2341948 2353150 PREDICTED: 4-coumarate--CoA ligase-like 7 GO:0003824 K01904
gene-evm.TU.Chr12.534 rna-evm.model.Chr12.534 Chr12 16272772 16279118 PREDICTED: ATP-dependent DNA helicase PIF1 GO:0000723;GO:0003678;GO:0006281 K15255

For more detailed data, you can explore the Download section to access the full dataset.