CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.506 rna-evm.model.Chr12.506 Chr12 14885048 14890803 PREDICTED: Partner of Y14 and mago GO:1903259 K14294
gene-evm.TU.Chr12.507 rna-evm.model.Chr12.507 Chr12 14896607 14898746 PREDICTED: E3 ubiquitin-protein ligase TRIM33 GO:0008270 K12026
gene-evm.TU.Chr12.508 rna-evm.model.Chr12.508 Chr12 14901032 14902711 PREDICTED: E3 ubiquitin-protein ligase TRIM33 nan K12026
gene-evm.TU.Chr12.509 rna-evm.model.Chr12.509 Chr12 14903267 14906584 PREDICTED: Mitochondrial ribosome-associated GTPase 1 GO:0005525 K19828
gene-evm.TU.Chr12.51 rna-evm.model.Chr12.51 Chr12 2313827 2315112 uncharacterized protein nan K19802
gene-evm.TU.Chr12.510 rna-evm.model.Chr12.510 Chr12 14916450 14921642 PREDICTED: DnaJ homolog subfamily C member 28 nan K19373
gene-evm.TU.Chr12.511 rna-evm.model.Chr12.511.1 Chr12 14958656 14998903 PREDICTED: Integrin alpha-PS1 GO:0007155;GO:0008305 K06583
gene-evm.TU.Chr12.514 rna-evm.model.Chr12.514 Chr12 15238554 15241067 uncharacterized protein nan K03409
gene-evm.TU.Chr12.515 rna-evm.model.Chr12.515 Chr12 15378345 15378752 uncharacterized protein nan nan
gene-evm.TU.Chr12.516 rna-evm.model.Chr12.516 Chr12 15378795 15379097 uncharacterized protein nan nan

For more detailed data, you can explore the Download section to access the full dataset.