CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.494 rna-evm.model.Chr12.494 Chr12 14564799 14569589 PREDICTED: Interferon-induced very large GTPase 1 GO:0005525 K12797
gene-evm.TU.Chr12.495 rna-evm.model.Chr12.495 Chr12 14601875 14625686 PREDICTED: Interferon-induced very large GTPase 1 GO:0005525 K12797
gene-evm.TU.Chr12.496 rna-evm.model.Chr12.496 Chr12 14649141 14717886 PREDICTED: Interferon-induced very large GTPase 1 GO:0003676;GO:0005525 K12797
gene-evm.TU.Chr12.497 rna-evm.model.Chr12.497 Chr12 14739338 14742259 PREDICTED: poly [ADP-ribose] polymerase 10/14/15 [EC:2.4.2.30] GO:0003676 K15261
gene-evm.TU.Chr12.498 rna-evm.model.Chr12.498 Chr12 14742271 14766592 PREDICTED: remodeling and spacing factor 1-like nan K15261
gene-evm.TU.Chr12.499 rna-evm.model.Chr12.499 Chr12 14766731 14771324 PREDICTED: Interferon-induced very large GTPase 1 GO:0005525 K22698
gene-evm.TU.Chr12.5 rna-evm.model.Chr12.5 Chr12 120897 126605 PREDICTED: 5-hydroxytryptamine receptor GO:0004930;GO:0004935;GO:0007186;GO:0016020 K04153
gene-evm.TU.Chr12.50 rna-evm.model.Chr12.50 Chr12 2247469 2248638 PREDICTED: aminopeptidase N [EC:3.4.11.2] nan K03173
gene-evm.TU.Chr12.500 rna-evm.model.Chr12.500 Chr12 14783562 14791021 PREDICTED: Zinc finger protein 782 GO:0003676 K22402
gene-evm.TU.Chr12.505 rna-evm.model.Chr12.505 Chr12 14861726 14883288 PREDICTED: Sentrin-specific protease 1 GO:0006508;GO:0008234 K08592

For more detailed data, you can explore the Download section to access the full dataset.