CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.480 rna-evm.model.Chr12.480 Chr12 14156387 14207451 PREDICTED: Serine/threonine-protein kinase DCLK1 GO:0004672;GO:0005524;GO:0006468 K02831
gene-evm.TU.Chr12.481 rna-evm.model.Chr12.481 Chr12 14218396 14224270 PREDICTED: Retina-specific copper amine oxidase GO:0005507;GO:0008131;GO:0009308;GO:0048038;GO:0055114 K11182
gene-evm.TU.Chr12.482 rna-evm.model.Chr12.482 Chr12 14224842 14225762 PREDICTED: Membrane primary amine oxidase GO:0005507;GO:0008131;GO:0009308;GO:0048038;GO:0055114 K11182
gene-evm.TU.Chr12.483 rna-evm.model.Chr12.483 Chr12 14226671 14264362 PREDICTED: ABC transporter G family member 14 GO:0005524;GO:0016020;GO:0016020;GO:0016887 K05681
gene-evm.TU.Chr12.484 rna-evm.model.Chr12.484 Chr12 14274905 14319705 PREDICTED: Peroxidase-like protein nan K19511
gene-evm.TU.Chr12.485 rna-evm.model.Chr12.485 Chr12 14323401 14347075 PREDICTED: PMS1 protein homolog 1 GO:0005524;GO:0006298;GO:0016887;GO:0030983;GO:0032300 K10864
gene-evm.TU.Chr12.486 rna-evm.model.Chr12.486 Chr12 14353171 14353920 PREDICTED: GTPase IMAP family member 7 GO:0005525 K06946
gene-evm.TU.Chr12.488 rna-evm.model.Chr12.488 Chr12 14379957 14381154 uncharacterized protein GO:0003676;GO:0008270 K12597
gene-evm.TU.Chr12.49 rna-evm.model.Chr12.49 Chr12 2177424 2178463 PREDICTED: 5-hydroxytryptamine receptor GO:0004930;GO:0007186;GO:0016020 K04153
gene-evm.TU.Chr12.491 rna-evm.model.Chr12.491 Chr12 14428914 14429663 PREDICTED: Immune-associated nucleotide-binding protein 5 GO:0005525 K06946

For more detailed data, you can explore the Download section to access the full dataset.