CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.47 rna-evm.model.Chr12.47 Chr12 2130133 2131724 PREDICTED: 5-hydroxytryptamine receptor GO:0004930;GO:0007186;GO:0016020 K04153
gene-evm.TU.Chr12.470 rna-evm.model.Chr12.470 Chr12 13609059 13610110 PREDICTED: Sodium-dependent glucose transporter 1 GO:0016020;GO:0055085 K08175
gene-evm.TU.Chr12.471 rna-evm.model.Chr12.471 Chr12 13817592 13823233 PREDICTED: inhibin beta B chain nan K04667
gene-evm.TU.Chr12.472 rna-evm.model.Chr12.472 Chr12 13833590 13839146 PREDICTED: inhibin beta B chain nan K22687
gene-evm.TU.Chr12.473 rna-evm.model.Chr12.473 Chr12 13945475 13951622 PREDICTED: Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 nan K04004
gene-evm.TU.Chr12.474 rna-evm.model.Chr12.474 Chr12 13972588 13973088 PREDICTED: Putative nuclease HARBI1 nan K23222
gene-evm.TU.Chr12.475 rna-evm.model.Chr12.475 Chr12 13975565 13977328 PREDICTED: Putative nuclease HARBI1 nan K23222
gene-evm.TU.Chr12.476 rna-evm.model.Chr12.476 Chr12 13986117 13992415 PREDICTED: conserved oligomeric Golgi complex subunit 8 nan K16351
gene-evm.TU.Chr12.478 rna-evm.model.Chr12.478 Chr12 14076749 14111622 PREDICTED: Integrin beta-PS nan K05719
gene-evm.TU.Chr12.479 rna-evm.model.Chr12.479 Chr12 14135444 14149109 PREDICTED: Serine/threonine-protein kinase DCLK3 GO:0004672;GO:0005524;GO:0006468 K02831

For more detailed data, you can explore the Download section to access the full dataset.