CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.456 rna-evm.model.Chr12.456 Chr12 13296952 13311749 PREDICTED: E3 ubiquitin-protein ligase HERC2 GO:0004842;GO:0016567;GO:0046872 K12231
gene-evm.TU.Chr12.457 rna-evm.model.Chr12.457 Chr12 13316555 13322935 PREDICTED: Putative transmembrane protein ORF68 nan K18713
gene-evm.TU.Chr12.458 rna-evm.model.Chr12.458 Chr12 13326258 13330304 PREDICTED: Hepatocyte nuclear factor 6 GO:0003677 K24896
gene-evm.TU.Chr12.459 rna-evm.model.Chr12.459 Chr12 13393950 13440361 PREDICTED: Uncharacterized protein C10orf67, mitochondrial nan K20283
gene-evm.TU.Chr12.460 rna-evm.model.Chr12.460 Chr12 13442333 13447329 PREDICTED: Sodium-dependent glucose transporter 1 GO:0016020;GO:0055085 K08175
gene-evm.TU.Chr12.461 rna-evm.model.Chr12.461 Chr12 13450394 13462115 PREDICTED: Kinesin-like protein KIF28P GO:0003777;GO:0007018 K10392
gene-evm.TU.Chr12.462 rna-evm.model.Chr12.462 Chr12 13468649 13478367 PREDICTED: Interferon-inducible GTPase 5 GO:0005525;GO:0016020 K17072
gene-evm.TU.Chr12.465 rna-evm.model.Chr12.465 Chr12 13509065 13509484 PREDICTED: Putative apoptosis inhibitor ORF99 nan K04725
gene-evm.TU.Chr12.466 rna-evm.model.Chr12.466 Chr12 13528353 13529171 PREDICTED: Interferon-inducible GTPase 5 GO:0005525;GO:0016020 K17072
gene-evm.TU.Chr12.468 rna-evm.model.Chr12.468 Chr12 13553687 13580232 PREDICTED: Interferon-inducible GTPase 1 GO:0005525;GO:0016020 K17072

For more detailed data, you can explore the Download section to access the full dataset.