CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.440 rna-evm.model.Chr12.440 Chr12 12810218 12814920 PREDICTED: V(D)J recombination-activating protein 1 GO:0004519;GO:0033151;GO:0043565;GO:0061630 K10628
gene-evm.TU.Chr12.443 rna-evm.model.Chr12.443 Chr12 12836585 12847878 PREDICTED: Parathyroid hormone/parathyroid hormone-related peptide receptor GO:0004888;GO:0004930;GO:0007166;GO:0007186;GO:0016020;GO:0016020 K04585
gene-evm.TU.Chr12.445 rna-evm.model.Chr12.445 Chr12 12963851 12969642 PREDICTED: small subunit ribosomal protein S9e nan nan
gene-evm.TU.Chr12.447_evm.TU.Chr12.446 rna-evm.model.Chr12.447_evm.model.Chr12.446 Chr12 12982415 13023217 PREDICTED: Interferon-induced very large GTPase 1 GO:0005525 K15261
gene-evm.TU.Chr12.448 rna-evm.model.Chr12.448 Chr12 13041449 13044708 PREDICTED: Carbohydrate sulfotransferase 11 GO:0008146;GO:0016020;GO:0016051 K01017
gene-evm.TU.Chr12.449 rna-evm.model.Chr12.449 Chr12 13089131 13118602 PREDICTED: Solute carrier family 28 member 3 GO:0005337;GO:0016020;GO:1901642 K11536
gene-evm.TU.Chr12.45 rna-evm.model.Chr12.45 Chr12 1514353 1517352 PREDICTED: CDGSH iron-sulfur domain-containing protein 3, mitochondrial GO:0043231;GO:0051537 K23886
gene-evm.TU.Chr12.450 rna-evm.model.Chr12.450 Chr12 13143298 13155642 uncharacterized protein nan K08177
gene-evm.TU.Chr12.453 rna-evm.model.Chr12.453 Chr12 13186237 13195316 PREDICTED: C-type mannose receptor 2 nan K10059
gene-evm.TU.Chr12.455 rna-evm.model.Chr12.455 Chr12 13231672 13286785 PREDICTED: E3 ubiquitin-protein ligase UBR3 GO:0008270;GO:0061630;GO:0071596 K11978

For more detailed data, you can explore the Download section to access the full dataset.