CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.429 rna-evm.model.Chr12.429 Chr12 12423266 12484236 PREDICTED: Reversion-inducing cysteine-rich protein with Kazal motifs GO:0001944;GO:0008191;GO:0060828;GO:1904684 K17461
gene-evm.TU.Chr12.43 rna-evm.model.Chr12.43 Chr12 1492251 1498167 PREDICTED: Sperm-associated antigen 6 GO:0005515 K25532
gene-evm.TU.Chr12.432 rna-evm.model.Chr12.432 Chr12 12516932 12528789 PREDICTED: L-proline trans-4-hydroxylase nan K00477
gene-evm.TU.Chr12.433 rna-evm.model.Chr12.433 Chr12 12551645 12563037 PREDICTED: Probable citrate synthase 1, mitochondrial GO:0046912 K01647
gene-evm.TU.Chr12.434 rna-evm.model.Chr12.434 Chr12 12586187 12602625 uncharacterized protein nan K04008
gene-evm.TU.Chr12.435 rna-evm.model.Chr12.435 Chr12 12608771 12616818 PREDICTED: Secretin receptor GO:0004888;GO:0004930;GO:0007166;GO:0007186;GO:0016020 K04585
gene-evm.TU.Chr12.437 rna-evm.model.Chr12.437 Chr12 12630559 12631798 PREDICTED: Calcitonin receptor GO:0004930;GO:0004948;GO:0016020 K04576
gene-evm.TU.Chr12.438 rna-evm.model.Chr12.438 Chr12 12771024 12798142 PREDICTED: Parathyroid hormone/parathyroid hormone-related peptide receptor GO:0004888;GO:0004930;GO:0007166;GO:0007186;GO:0016020;GO:0016020 K04585
gene-evm.TU.Chr12.439 rna-evm.model.Chr12.439 Chr12 12801898 12802970 PREDICTED: Zinc finger protein 862 nan K24642
gene-evm.TU.Chr12.44 rna-evm.model.Chr12.44 Chr12 1498196 1504092 PREDICTED: CDGSH iron-sulfur domain-containing protein 3, mitochondrial GO:0043231;GO:0051537 K23886

For more detailed data, you can explore the Download section to access the full dataset.