CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.405 rna-evm.model.Chr12.405 Chr12 11338776 11354615 PREDICTED: histone-lysine N-methyltransferase MLL2 [EC:2.1.1.43] GO:0003676 K23718
gene-evm.TU.Chr12.406 rna-evm.model.Chr12.406 Chr12 11365020 11400910 PREDICTED: Zinc finger protein 546 GO:0003676 K22534
gene-evm.TU.Chr12.407 rna-evm.model.Chr12.407 Chr12 11410150 11464068 PREDICTED: Fibroblast growth factor receptor 4 nan K05095
gene-evm.TU.Chr12.408 rna-evm.model.Chr12.408 Chr12 11471683 11472717 PREDICTED: werner syndrome ATP-dependent helicase [EC:3.6.4.12] nan K10900
gene-evm.TU.Chr12.409 rna-evm.model.Chr12.409 Chr12 11473206 11477630 PREDICTED: THAP domain-containing protein 4 GO:0003676 K23204
gene-evm.TU.Chr12.41 rna-evm.model.Chr12.41 Chr12 1474032 1485504 PREDICTED: Coiled-coil domain-containing protein 148 nan K16462
gene-evm.TU.Chr12.410 rna-evm.model.Chr12.410 Chr12 11478507 11506666 PREDICTED: Werner syndrome ATP-dependent helicase homolog GO:0003676;GO:0005524;GO:0006260;GO:0006281;GO:0008270;GO:0043138 K10900
gene-evm.TU.Chr12.412 rna-evm.model.Chr12.412 Chr12 11530494 11536977 uncharacterized protein nan nan
gene-evm.TU.Chr12.413 rna-evm.model.Chr12.413 Chr12 11537566 11540420 PREDICTED: Zinc finger protein 345 GO:0003676 K09228
gene-evm.TU.Chr12.414 rna-evm.model.Chr12.414 Chr12 11581777 11582972 PREDICTED: neuronal cell adhesion molecule nan nan

For more detailed data, you can explore the Download section to access the full dataset.