CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.391 rna-evm.model.Chr12.391 Chr12 10824931 10826091 PREDICTED: Transposon Tf2-9 polyprotein nan K06245
gene-evm.TU.Chr12.392 rna-evm.model.Chr12.392 Chr12 10826099 10827541 uncharacterized protein nan nan
gene-evm.TU.Chr12.395 rna-evm.model.Chr12.395 Chr12 10991452 11001346 uncharacterized protein nan nan
gene-evm.TU.Chr12.398 rna-evm.model.Chr12.398 Chr12 11129918 11133193 uncharacterized protein nan nan
gene-evm.TU.Chr12.399 rna-evm.model.Chr12.399 Chr12 11159709 11160017 PREDICTED: exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-] nan nan
gene-evm.TU.Chr12.4 rna-evm.model.Chr12.4 Chr12 114287 119237 PREDICTED: Hemicentin-1 nan K16857
gene-evm.TU.Chr12.400 rna-evm.model.Chr12.400 Chr12 11233393 11236686 uncharacterized protein nan nan
gene-evm.TU.Chr12.402 rna-evm.model.Chr12.402 Chr12 11264819 11316515 PREDICTED: Isopentenyl phosphate kinase GO:0016301 K06981
gene-evm.TU.Chr12.403 rna-evm.model.Chr12.403 Chr12 11318912 11325923 PREDICTED: Sarcoplasmic calcium-binding protein nan K24448
gene-evm.TU.Chr12.404 rna-evm.model.Chr12.404 Chr12 11331158 11334409 PREDICTED: Sarcoplasmic calcium-binding protein GO:0005509 K13448

For more detailed data, you can explore the Download section to access the full dataset.