CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.378 rna-evm.model.Chr12.378 Chr12 10041395 10044233 PREDICTED: deoxyribonuclease-1-like protein [EC:3.1.21.-] nan K11994
gene-evm.TU.Chr12.379 rna-evm.model.Chr12.379 Chr12 10049930 10055237 PREDICTED: Plasma kallikrein GO:0004252;GO:0006508 K20111
gene-evm.TU.Chr12.380 rna-evm.model.Chr12.380 Chr12 10058112 10066235 PREDICTED: ATP synthase subunit beta, mitochondrial GO:0005524;GO:0046034;GO:1902600 K02133
gene-evm.TU.Chr12.382 rna-evm.model.Chr12.382 Chr12 10090350 10103754 uncharacterized protein nan nan
gene-evm.TU.Chr12.384 rna-evm.model.Chr12.384 Chr12 10112635 10206808 PREDICTED: Sodium-dependent glucose transporter 1 GO:0016020;GO:0055085 K08175
gene-evm.TU.Chr12.386 rna-evm.model.Chr12.386 Chr12 10221053 10230921 PREDICTED: Sodium-dependent glucose transporter 1 GO:0016020;GO:0055085 K08175
gene-evm.TU.Chr12.387 rna-evm.model.Chr12.387 Chr12 10260834 10353234 PREDICTED: Glutathione S-transferase Mu 1 GO:0005515 K04097
gene-evm.TU.Chr12.389 rna-evm.model.Chr12.389 Chr12 10712710 10723034 PREDICTED: solute carrier family 6 (neurotransmitter transporter, serotonin) member 4 nan K06846
gene-evm.TU.Chr12.39 rna-evm.model.Chr12.39 Chr12 1460932 1462632 PREDICTED: Genome polyprotein nan K21037
gene-evm.TU.Chr12.390 rna-evm.model.Chr12.390 Chr12 10730264 10761602 PREDICTED: Glutathione S-transferase Mu 1 GO:0005515 K04097

For more detailed data, you can explore the Download section to access the full dataset.