CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.363 rna-evm.model.Chr12.363 Chr12 9785740 9790254 PREDICTED: RNA-binding protein 48 nan K24824
gene-evm.TU.Chr12.366 rna-evm.model.Chr12.366 Chr12 9810169 9817650 PREDICTED: Secernin-3 GO:0006508;GO:0016805 K14358
gene-evm.TU.Chr12.367 rna-evm.model.Chr12.367 Chr12 9823725 9824581 PREDICTED: Uncharacterized protein C8orf74 nan K27268
gene-evm.TU.Chr12.368 rna-evm.model.Chr12.368 Chr12 9829181 9883691 PREDICTED: Kinesin-like protein KIF28P GO:0003676;GO:0003777;GO:0005515;GO:0005524;GO:0007018;GO:0008017 K10392
gene-evm.TU.Chr12.369 rna-evm.model.Chr12.369 Chr12 9883780 9892005 PREDICTED: Protein-lysine methyltransferase METTL21D nan K21806
gene-evm.TU.Chr12.37 rna-evm.model.Chr12.37 Chr12 1434884 1458081 PREDICTED: Cell surface hyaluronidase nan K22144
gene-evm.TU.Chr12.374 rna-evm.model.Chr12.374 Chr12 9937150 9964235 PREDICTED: Solute carrier family 28 member 3 GO:0005337;GO:0016020;GO:1901642 K11536
gene-evm.TU.Chr12.375 rna-evm.model.Chr12.375 Chr12 9981794 9987998 PREDICTED: Probable serine racemase nan K12235
gene-evm.TU.Chr12.376 rna-evm.model.Chr12.376 Chr12 10011493 10022548 PREDICTED: Probable serine racemase nan K12235
gene-evm.TU.Chr12.377 rna-evm.model.Chr12.377 Chr12 10033541 10041180 PREDICTED: Transposable element Tcb2 transposase GO:0003677;GO:0006313;GO:0015074 K07494

For more detailed data, you can explore the Download section to access the full dataset.