CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.340 rna-evm.model.Chr12.340 Chr12 9229255 9239709 PREDICTED: MOB-like protein phocein nan K06685
gene-evm.TU.Chr12.341 rna-evm.model.Chr12.341 Chr12 9246748 9271410 PREDICTED: Solute carrier family 28 member 3 GO:0005337;GO:0016020;GO:1901642 K11536
gene-evm.TU.Chr12.342 rna-evm.model.Chr12.342 Chr12 9300034 9303304 PREDICTED: Probable serine racemase nan K12235
gene-evm.TU.Chr12.343 rna-evm.model.Chr12.343 Chr12 9303700 9305945 PREDICTED: Serine racemase nan K12235
gene-evm.TU.Chr12.344 rna-evm.model.Chr12.344 Chr12 9309976 9316370 PREDICTED: Probable serine racemase nan K12235
gene-evm.TU.Chr12.345 rna-evm.model.Chr12.345 Chr12 9329801 9365032 PREDICTED: Solute carrier family 28 member 3 GO:0005337;GO:0016020;GO:1901642 K11536
gene-evm.TU.Chr12.348 rna-evm.model.Chr12.348 Chr12 9403202 9407279 PREDICTED: Protein-lysine methyltransferase METTL21D nan K21806
gene-evm.TU.Chr12.349 rna-evm.model.Chr12.349 Chr12 9407331 9415192 PREDICTED: Zinc finger protein 28 homolog GO:0003676 K20796
gene-evm.TU.Chr12.35 rna-evm.model.Chr12.35 Chr12 1357493 1363599 uncharacterized protein nan K23209
gene-evm.TU.Chr12.350 rna-evm.model.Chr12.350 Chr12 9420527 9453088 PREDICTED: Kinesin-like protein KIF28P GO:0003777;GO:0005515;GO:0005524;GO:0007018;GO:0008017 K10392

For more detailed data, you can explore the Download section to access the full dataset.