CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.351 rna-evm.model.Chr12.351 Chr12 9461464 9467616 PREDICTED: Secernin-3 GO:0006508;GO:0016805 K14358
gene-evm.TU.Chr12.352 rna-evm.model.Chr12.352 Chr12 9470343 9475561 PREDICTED: RNA-binding protein 48 nan K24824
gene-evm.TU.Chr12.354 rna-evm.model.Chr12.354 Chr12 9510243 9558372 PREDICTED: Protein cordon-bleu GO:0003779;GO:0003785 K18623
gene-evm.TU.Chr12.355 rna-evm.model.Chr12.355 Chr12 9579302 9600629 PREDICTED: Deoxyribonuclease-1 GO:0004536;GO:0006308 K11994
gene-evm.TU.Chr12.356 rna-evm.model.Chr12.356 Chr12 9609374 9626735 PREDICTED: CD209 antigen-like protein 2 nan K10064
gene-evm.TU.Chr12.357 rna-evm.model.Chr12.357 Chr12 9634006 9643246 PREDICTED: ATP synthase subunit beta, mitochondrial GO:0005524;GO:0046034;GO:1902600 K02133
gene-evm.TU.Chr12.358 rna-evm.model.Chr12.358 Chr12 9646061 9651521 PREDICTED: Plasma kallikrein GO:0004252;GO:0006508 K08664
gene-evm.TU.Chr12.359 rna-evm.model.Chr12.359 Chr12 9656241 9662395 PREDICTED: Deoxyribonuclease-1 GO:0004536;GO:0006308 K11994
gene-evm.TU.Chr12.36 rna-evm.model.Chr12.36 Chr12 1422963 1432992 PREDICTED: Zinc finger protein 862 GO:0046983 K24644
gene-evm.TU.Chr12.360 rna-evm.model.Chr12.360.2 Chr12 9683281 9764430 PREDICTED: Protein cordon-bleu GO:0003779;GO:0003785 K24046

For more detailed data, you can explore the Download section to access the full dataset.