CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.313 rna-evm.model.Chr12.313 Chr12 8580377 8582520 PREDICTED: Sarcoplasmic calcium-binding protein nan K15825
gene-evm.TU.Chr12.314 rna-evm.model.Chr12.314 Chr12 8584723 8585087 PREDICTED: Sarcoplasmic calcium-binding protein GO:0005509 K13974
gene-evm.TU.Chr12.315 rna-evm.model.Chr12.315 Chr12 8592923 8596443 PREDICTED: Sarcoplasmic calcium-binding protein GO:0005509 K13448
gene-evm.TU.Chr12.316 rna-evm.model.Chr12.316 Chr12 8640776 8641738 PREDICTED: Sarcoplasmic calcium-binding protein nan K23901
gene-evm.TU.Chr12.317 rna-evm.model.Chr12.317 Chr12 8652063 8691336 PREDICTED: Sarcoplasmic calcium-binding protein GO:0005509 K19701
gene-evm.TU.Chr12.318 rna-evm.model.Chr12.318 Chr12 8695772 8738779 PREDICTED: Calpain-7 GO:0004198;GO:0006508 K08576
gene-evm.TU.Chr12.319 rna-evm.model.Chr12.319 Chr12 8745093 8812661 PREDICTED: Mucin-5B GO:0005515 K03900
gene-evm.TU.Chr12.32 rna-evm.model.Chr12.32 Chr12 1158855 1159494 PREDICTED: Probable RNA-directed DNA polymerase from transposon X-element nan K26653
gene-evm.TU.Chr12.320 rna-evm.model.Chr12.320 Chr12 8824166 8838274 uncharacterized protein nan K17323
gene-evm.TU.Chr12.322 rna-evm.model.Chr12.322 Chr12 8850546 8862165 PREDICTED: Methyltransferase-like protein 2 nan K24974

For more detailed data, you can explore the Download section to access the full dataset.